Adjacency matrix
In graph theory and computer science, an adjacency matrix is a square matrix used to represent a finite graph. The elements of the matrix indicate whether pairs of vertices are adjacent or not in the graph.
In the special case of a finite simple graph, the adjacency matrix is a (0,1)matrix with zeros on its diagonal. If the graph is undirected, the adjacency matrix is symmetric. The relationship between a graph and the eigenvalues and eigenvectors of its adjacency matrix is studied in spectral graph theory.
The adjacency matrix should be distinguished from the incidence matrix for a graph, a different matrix representation whose elements indicate whether vertex–edge pairs are incident or not.
Definition
For a simple graph with vertex set V, the adjacency matrix is a square  V  ×  V  matrix A such that its element A_{ij} is one when there is an edge from vertex i to vertex j, and zero when there is no edge.^{[1]} The diagonal elements of the matrix are all zero, since edges from a vertex to itself (loops) are not allowed in simple graphs. It is also sometimes useful in algebraic graph theory to replace the nonzero elements with algebraic variables.^{[2]}
The same concept can be extended to multigraphs and graphs with loops by storing the number of edges between each two vertices in the corresponding matrix element, and by allowing nonzero diagonal elements. Loops may be counted either once (as a single edge) or twice (as two vertexedge incidences), as long as a consistent convention is followed. Undirected graphs often use the latter convention of counting loops twice, whereas directed graphs typically use the former convention.
Adjacency matrix of a bipartite graph
The adjacency matrix A of a bipartite graph whose two parts have r and s vertices can be written in the form
where B is an r × s matrix, and 0_{r,r} and 0_{s,s} represent the r × r and s × s zero matrices. In this case, the smaller matrix B uniquely represents the graph, and the remaining parts of A can be discarded as redundant. B is sometimes called the biadjacency matrix.
Formally, let G = (U, V, E) be a bipartite graph with parts U = {u_{1}, …, u_{r}} and V = {v_{1}, …, v_{s}}. The biadjacency matrix is the r × s 0–1 matrix B in which b_{i,j} = 1 if and only if (u_{i}, v_{j}) ∈ E.
If G is a bipartite multigraph or weighted graph then the elements b_{i,j} are taken to be the number of edges between the vertices or the weight of the edge (u_{i}, v_{j}), respectively.
Variations
An (a, b, c)adjacency matrix A of a simple graph has A_{i,j} = a if (i, j) is an edge, b if it is not, and c on the diagonal. The Seidel adjacency matrix is a (−1, 1, 0)adjacency matrix. This matrix is used in studying strongly regular graphs and twographs.^{[3]}
The distance matrix has in position (i, j) the distance between vertices v_{i} and v_{j}. The distance is the length of a shortest path connecting the vertices. Unless lengths of edges are explicitly provided, the length of a path is the number of edges in it. The distance matrix resembles a high power of the adjacency matrix, but instead of telling only whether or not two vertices are connected (i.e., the connection matrix, which contains boolean values), it gives the exact distance between them.
Examples
The convention followed here (for an undirected graph) is that each edge adds 1 to the appropriate cell in the matrix, and each loop adds 2. This allows the degree of a vertex to be easily found by taking the sum of the values in either its respective row or column in the adjacency matrix.
Labeled graph  Adjacency matrix 

 
 


The adjacency matrix of a complete graph contains all ones except along the diagonal where there are only zeros. The adjacency matrix of an empty graph is a zero matrix.
Properties
Spectrum
The adjacency matrix of an undirected simple graph is symmetric, and therefore has a complete set of real eigenvalues and an orthogonal eigenvector basis. The set of eigenvalues of a graph is the spectrum of the graph.^{[4]}
For dregular graphs, d is also an eigenvalue of A for the vector v = (1, …, 1), and G is connected if and only if the multiplicity of the eigenvalue d is 1. It can be shown that −d is also an eigenvalue of A if G is a connected bipartite graph. The above are results of the Perron–Frobenius theorem.
Isomorphism and invariants
Suppose two directed or undirected graphs G_{1} and G_{2} with adjacency matrices A_{1} and A_{2} are given. G_{1} and G_{2} are isomorphic if and only if there exists a permutation matrix P such that
In particular, A_{1} and A_{2} are similar and therefore have the same minimal polynomial, characteristic polynomial, eigenvalues, determinant and trace. These can therefore serve as isomorphism invariants of graphs. However, two graphs may possess the same set of eigenvalues but not be isomorphic.^{[5]} Such linear operators are said to be isospectral.
Matrix powers
If A is the adjacency matrix of the directed or undirected graph G, then the matrix A^{n} (i.e., the matrix product of n copies of A) has an interesting interpretation: the element (i, j) gives the number of (directed or undirected) walks of length n from vertex i to vertex j. If n is the smallest nonnegative integer, such that for all i, j, the element (i, j) of A^{n} is positive, then n is the distance between vertex i and vertex j. This implies, for example, that the number of triangles in an undirected graph G is exactly the trace of A^{3} divided by 6. Note that the adjacency matrix can be used to determine whether or not the graph is connected.
Data structures
The adjacency matrix may be used as a data structure for the representation of graphs in computer programs for manipulating graphs. The main alternative data structure, also in use for this application, is the adjacency list.^{[6]}^{[7]}
Because each entry in the adjacency matrix requires only one bit, it can be represented in a very compact way, occupying only  V ^{2}/8 bytes to represent a directed graph, or (by using a packed triangular format and only storing the lower triangular part of the matrix) approximately  V ^{2}/16 bytes to represent an undirected graph. Although slightly more succinct representations are possible, this method gets close to the informationtheoretic lower bound for the minimum number of bits needed to represent all nvertex graphs.^{[8]} For storing graphs in text files, fewer bits per byte can be used to ensure that all bytes are text characters, for instance by using a Base64 representation.^{[9]} Besides avoiding wasted space, this compactness encourages locality of reference. However, for a large sparse graph, adjacency lists require less storage space, because they do not waste any space to represent edges that are not present.^{[7]}^{[10]}
An alternative form of adjacency matrix, which however requires a larger amount of space, replaces the numbers in each element of the matrix with pointers to edge objects (when edges are present) or null pointers (when there is no edge).^{[10]} It is also possible to store edge weights directly in the elements of an adjacency matrix.^{[7]}
Besides the space tradeoff, the different data structures also facilitate different operations. Finding all vertices adjacent to a given vertex in an adjacency list is as simple as reading the list, and takes time proportional to the number of neighbors. With an adjacency matrix, an entire row must instead be scanned, which takes a larger amount of time, proportional to the number of vertices in the whole graph. On the other hand, testing whether there is an edge between two given vertices can be determined at once with an adjacency matrix, while requiring time proportional to the minimum degree of the two vertices with the adjacency list.^{[7]}^{[10]}
References
 ↑ Biggs, Norman (1993), Algebraic Graph Theory, Cambridge Mathematical Library (2nd ed.), Cambridge University Press, Definition 2.1, p. 7.
 ↑ Harary, Frank (1962), "The determinant of the adjacency matrix of a graph", SIAM Review, 4: 202–210, doi:10.1137/1004057, MR 0144330.
 ↑ Seidel, J. J. (1968). "Strongly Regular Graphs with (−1, 1, 0) Adjacency Matrix Having Eigenvalue 3". Lin. Alg. Appl. 1 (2): 281–298. doi:10.1016/00243795(68)900086.
 ↑ Biggs (1993), Chapter 2 ("The spectrum of a graph"), pp. 7–13.
 ↑ Godsil, Chris; Royle, Gordon Algebraic Graph Theory, Springer (2001), ISBN 0387952411, p.164
 ↑ Goodrich & Tamassia (2015), p. 361: "There are two data structures that people often use to represent graphs, the adjacency list and the adjacency matrix."
 1 2 3 4 Cormen, Thomas H.; Leiserson, Charles E.; Rivest, Ronald L.; Stein, Clifford (2001), "Section 22.1: Representations of graphs", Introduction to Algorithms (Second ed.), MIT Press and McGrawHill, pp. 527–531, ISBN 0262032937.
 ↑ Turán, György (1984), "On the succinct representation of graphs", Discrete Applied Mathematics, 8 (3): 289–294, doi:10.1016/0166218X(84)901264, MR 749658.
 ↑ McKay, Brendan, Description of graph6 and sparse6 encodings.
 1 2 3 Goodrich, Michael T.; Tamassia, Roberto (2015), Algorithm Design and Applications, Wiley, p. 363.
External links
Wikimedia Commons has media related to Adjacency matrices of graphs. 
 Fluffschack — an educational Java web start game demonstrating the relationship between adjacency matrices and graphs.
 Open Data Structures  Section 12.1  AdjacencyMatrix: Representing a Graph by a Matrix
 Café math : Adjacency Matrices of Graphs : Application of the adjacency matrices to the computation generating series of walks.